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2000 MS Method Electron
Ionization
The Electron Ionization Scan Function with Automatic
Gain Control (AGC)
The ion trap has a maximum storage capacity, beyond which mass resolution
and spectral quality deteriorate. The number of ions created is proportional to the
ionization time, with more ions being produced the longer the ionization time.
Automatic Gain Control (AGC) controls the ionization time in order to maintain
the number of ions in the trap at the optimum level.
The AGC scan function consists of a prescan and up to six scan segments. The
prescan is done using resonance ion ejection and the number of ions detected in
the prescan is used to calculate the ionization time for the six scan segments.
The figure below illustrates four scan segments correspond to the following four
portions of the mass range (default values): 10 to 99 m/z, 100 to 249 m/z, 250 to
399 m/z, and 400 to 650 m/z. One scan involves one complete ramping of the rf
voltage over the mass range selected by the user. The rf voltage is ramped at a
constant rate of approximately 5600 m/z per sec. One complete scan at this fixed
rate produces a microscan.
The AGC Scan Function
The AGC software automatically selects an ionization time from 10 µsec to 65
msec for each of the six scan segments of the microscan, depending on the
amount of analyte in the ion trap and the tuning parameters. An estimate of the
number of ions formed in the ion trap is provided by a short prescan that consists
of a 0.1 millisecond ionization period. For low levels (e.g., for baseline or small
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